- Code: DT0640
- Unit Coordinator: Markus Faustmann
- Programme: InterMaths
- ECTS Credits: 7
- Semester: 2
- Year: 1
- Campus: Vienna University of Technology
- Language: English
- Aims:
Being able to solve stationary partial differential equations numerically, analyse the quality of numerical solutions, select proper methods and implement them in a computer program.
- Content:
- Variational formulations
- Sobolev spaces, H(div), H(curl)
- Finite element spaces (h, p, hp)
- Mixed formulations,
- Discontinuous Galerkin Methods,
- Time-dependent problems - Pre-requisites:
Applied Mathematics Foundations
- Reading list:
- Lecture notes,
- Dietrich Braess: Finite Elements: Theory, Fast Solvers, and Applications in Solid Mechanics, Cambridge University Press, 2007
- Cleas Johnson: Numerical Solution of Partial Differential Equations by the Finite Element Method, Cambridge Univ. Press, 1987, Dover 2009
- Susanne Brenner & Ridgway Scott: The Mathematical Theory of Finite Elements, Springer 2008
- Alexandre Ern & Jean-Luc Guermond: Theory and Practice of Finite Elements, Springer, 2010
- Unit Coordinator: Alessandra Tessitore, Daria Capece
- ECTS Credits: 6
- Semester: 1
- Year: 2
- Campus: University of L'Aquila
- Language: English
- Aims:
Tumor initiation, progression and invasion are complex processes involving multiple and different phenomena. Mathematical models and computer simulations can help to describe, schematize and comprehend them, to provide data which could be putatively used in clinical practice to prevent and/or more specifically treat cancer. In this context, a multidisciplinary approach is fundamental to reach this goal. The main objective of this course is to approach and understand the biological processes at the base of cancer, focusing on the most significant features of oncogenesis, with the aim to provide basic information which can be applied to mathematical modelling. On completion, the student should:
- know fundamentals about structure and functions of nucleic acids and proteins in eukaryotic cell;
- understand the significance of gene mutations and epigenetics alterations in diseases;
- identify tumor classification criteria;
- understand biological and functional mechanisms at the base of cancer initiation and progression; -
- know the most important databases for DNA mutation classification, microRNA and protein pathway analysis as well as on-line resources for acquiring datasets to be applied to big data analysis,
- know and understand the principles at the base of personalized therapy in cancer to predict the response to therapeutic schemes.
- Content:
Topics of this module (6 CFU)
Fundamentals about the structure and the role of nucleic acids and proteins (8 hrs).
Genetic and epigenetic mechanisms at the base of oncogenesis (gene mutations, DNA damage repair system failure, methylation, microRNA dysregulation) (9 hrs).
Features of cancer cells and tumor classification (15 hrs).
Biological mechanisms of angiogenesis, invasion and metastasis (8 hrs).
Molecular pathways involved in cell differentiation, proliferation and survival (7 hrs).
Big data in cancer analysis (6 hrs).
Personalized therapy in cancer (5 hrs).
In vitro and in vivo models for the study of tumor biology (2 hrs). - Reading list:
Articles/reviews about the topics of the course
Study material provided by the Professor
- Code: DT0011
- Unit Coordinator: Giordano Pola
- ECTS Credits: 6
- Semester: 1
- Year: 2
- Campus: University of L'Aquila
- Language: English
- Aims:
The aim of this course is to provide students with basics about modeling, analysis and control of networked and multi-agent systems through consensus techniques.
- Content:
- Introduction to networked and multi-agent systems.
- Recalls of graph theory.
- The agreement protocol: the linear and nonlinear cases.
- Formation control.
- Reading list:
Graph Theoretic Methods in Multiagent Networks, Princeton University Press, Mehran Mesbahi & Magnus Egerstedt, 2010
- Code: DT0704
- Unit Coordinator: Marco Di Francesco, Antonio Esposito
- ECTS Credits: 6
- Semester: 1
- Year: 2
- Campus: University of L'Aquila
- Language: English
- Aims:
This course contributes to one of the learning objectives of the degree programmes in Mathematical Modelling and Mathematical Engineering, namely the formation of the student on advanced mathematical modelling in an interdisciplinary context, in particular in the biology/medicine area, more specifically in the field of mathematical modelling applied to the diffusion of epidemics, which is the main goal of the curriculum "Modelling and simulation of infectious diseases" of the degree program in Mathematical Modelling. Moreover, the course contributes to forming the student in the context of mathematical modelling applied to population dynamics, in agreement with the objectives of the curriculum "Mathematicla Models in Social Sciences" of the degree programme in Mathematical Modelling.
At the end of the course, the student
1) will be equipped with a sound knowledge on population dynamics modelling, particularly compartmental models which can also be applied in epidemiology.
2) will be able to formulate "ad-hoc" deterministic models, such as ordinary differential equations, partial differential equations, interacting particle systems, that describe the dynamics of an epidemics in specific situations.
3) will possess analytical techniques allowing to resolve the models studied and to determine the qualitative behaviour of the solutions to those models.
4) complement the models with auxiliary terms in order to plan specific "containment strategies" for epidemiological models.
- Content:
1) Introduction to population dynamics modelling via ODEs.
2) Introduction to epidemic modelling. The Kermack-McKendrick models and its variants.
3) Modelling of vector-borne diseases. Models with delay.
4) Computing the basic reproduction number.
5) Complex epidemics modelling, multi-group modelling.
Control strategies in ODE models.6) Age structured population models and applications in epidemiology. Class-Age structured models in epidemiology.
7) Spatial heterogeneity in population dynamics. Models with diffusion.
8) Reaction-diffusion systems. Travelling waves.
Lagrangian movements. Particle models. Nonlocal models. Discrete vs Continuum modeling using integro-differential equations.10) SIR (and variants) models with local and nonlocal diffusion.
11) Graph modeling for population dynamics
- Pre-requisites:
Dynamical systems, analytical methods for to resolutoin of ordinary differential equations.
Basics of linear partial differential equations. - Reading list:
James D. Murray; Mathematical biology I: An introduction; Springer.
James D. Murray; Mathematical biology II: Spatial Models and biomedical applications; Springer.
Fred Brauer, Pauline van den Driessche, Jianhong Wu; Mathematical Epidemiology; Lecture notes in mathematics; Springer.
Maia Martcheva - An Introduction to Mathematical Epidemiology; Texts in Applied Mathematics 61, Springer.
Lecture notes by the lecturer.